Re: Corpora: protein name list

From: Hsin-Hsi Chen (hh_chen@csie.ntu.edu.tw)
Date: Fri Nov 16 2001 - 06:57:55 MET

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    The following summarized the response to the ˇ§protein name listˇ¨.

    Thanks.

     

    1. from Fredrik Olsson

    The SwissProt protein knowledge base can form a base for a list of
    protein names. It is available at:
    http://www.expasy.ch/sprot/sprot-top.html

     

    2. from Lee Gillam

    Try: www.genomicglossaries.com

     

    3. from George Demetriou

    You can find lists of protein names in the following sites:
    SCOP database:
    http://scop.mrc-lmb.cam.ac.uk/scop/

    CATH database:
    http://www.biochem.ucl.ac.uk/bsm/cath/index.html

    Protein Data Bank:
    ftp://ftp.rcsb.org/pub/pdb/

    Enzyme names from Expasy:
    ftp://www.expasy.ch/databases/enzyme

     

    4. from Bushra Zawaydeh

    you can see the UMLS. They have it.
    http://www.nlm.nih.gov/research/umls/

     

    5. from Philip Resnik

    You might find GenBank useful (http://www.ncbi.nlm.nih.gov/Genbank/).
    In particular, there is a protein database "compiled from a variety of
    sources, including SwissProt, PIR, PRF, PDB" (see the information at
    http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein).
    Also, the SWISS-PROT database can be downloaded; see the "downloading"
    link at http://www.expasy.ch/sprot/sprot-top.html. Either of these
    should provide a source from which a protein name list could be
    extracted.

    Hsin-Hsi Chen

    National Taiwan University



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