The following summarized the response to the ˇ§protein name listˇ¨.
Thanks.
1. from Fredrik Olsson
The SwissProt protein knowledge base can form a base for a list of
protein names. It is available at:
http://www.expasy.ch/sprot/sprot-top.html
2. from Lee Gillam
Try: www.genomicglossaries.com
3. from George Demetriou
You can find lists of protein names in the following sites:
SCOP database:
http://scop.mrc-lmb.cam.ac.uk/scop/
CATH database:
http://www.biochem.ucl.ac.uk/bsm/cath/index.html
Protein Data Bank:
ftp://ftp.rcsb.org/pub/pdb/
Enzyme names from Expasy:
ftp://www.expasy.ch/databases/enzyme
4. from Bushra Zawaydeh
you can see the UMLS. They have it.
http://www.nlm.nih.gov/research/umls/
5. from Philip Resnik
You might find GenBank useful (http://www.ncbi.nlm.nih.gov/Genbank/).
In particular, there is a protein database "compiled from a variety of
sources, including SwissProt, PIR, PRF, PDB" (see the information at
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein).
Also, the SWISS-PROT database can be downloaded; see the "downloading"
link at http://www.expasy.ch/sprot/sprot-top.html. Either of these
should provide a source from which a protein name list could be
extracted.
Hsin-Hsi Chen
National Taiwan University
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